Genome-wide analysis of plant glutaredoxin systems.
Identifieur interne : 000D49 ( Main/Exploration ); précédent : 000D48; suivant : 000D50Genome-wide analysis of plant glutaredoxin systems.
Auteurs : Nicolas Rouhier [France] ; Jérémy Couturier ; Jean-Pierre JacquotSource :
- Journal of experimental botany [ 0022-0957 ] ; 2006.
Descripteurs français
- KwdFr :
- Arabidopsis (génétique), Données de séquences moléculaires (MeSH), Famille multigénique (MeSH), Glutarédoxines (MeSH), Glutathione reductase (génétique), Génome végétal (MeSH), Oryza (génétique), Oxidoreductases (génétique), Oxidoreductases (physiologie), Oxydoréduction (MeSH), Populus (enzymologie), Populus (génétique), Protéines végétales (génétique), Protéines végétales (physiologie), Séquence d'acides aminés (MeSH).
- MESH :
- enzymologie : Populus.
- génétique : Arabidopsis, Glutathione reductase, Oryza, Oxidoreductases, Populus, Protéines végétales.
- physiologie : Oxidoreductases, Protéines végétales.
- Données de séquences moléculaires, Famille multigénique, Glutarédoxines, Génome végétal, Oxydoréduction, Séquence d'acides aminés.
English descriptors
- KwdEn :
- Amino Acid Sequence (MeSH), Arabidopsis (genetics), Genome, Plant (MeSH), Glutaredoxins (MeSH), Glutathione Reductase (genetics), Molecular Sequence Data (MeSH), Multigene Family (MeSH), Oryza (genetics), Oxidation-Reduction (MeSH), Oxidoreductases (genetics), Oxidoreductases (physiology), Plant Proteins (genetics), Plant Proteins (physiology), Populus (enzymology), Populus (genetics).
- MESH :
- chemical , genetics : Glutathione Reductase, Oxidoreductases, Plant Proteins.
- chemical , physiology : Oxidoreductases, Plant Proteins.
- chemical : Glutaredoxins.
- enzymology : Populus.
- genetics : Arabidopsis, Oryza, Populus.
- Amino Acid Sequence, Genome, Plant, Molecular Sequence Data, Multigene Family, Oxidation-Reduction.
Abstract
The recent release of the first tree genome (Populus trichocarpa) has allowed a comparison to be made of the multigenic glutaredoxin (Grx) and glutathione reductase (GR) families of this tree with those of other sequenced organisms and especially of the two other fully sequenced plant species, Arabidopsis thaliana and Oryza sativa. Grxs are small proteins involved in disulphide bridge or protein-glutathione adduct reduction, and they are maintained in a reduced form using glutathione and an NADPH-dependent GR. While the P. trichocarpa and O. sativa genomes are nearly five times larger than that of A. thaliana, they contain approximately 45 000 and 37 500 genes compared with the 25 500 genes of A. thaliana. On the one hand, the GR gene composition varies little between species and the gene structures are relatively conserved. On the other hand, the Grx gene family can be divided into three subgroups and the gene content is larger in P. trichocarpa (36 genes) compared with A. thaliana and O. sativa (31 and 27 genes, respectively). This could be partly explained by the occurrence of more duplication events, and this is especially true for one of the three identified Grx subgroups (subgroup III). The expression of most of these genes was confirmed by analysing expressed sequence tags present in various databases. In addition, the expression of Grx of subgroups I and II was examined by RT-PCR in various poplar organs. A complete classification based essentially on gene structure and sequence identity is proposed.
DOI: 10.1093/jxb/erl001
PubMed: 16720602
Affiliations:
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nuts="2">Lorraine (région)</region><settlement type="city">Vandœuvre-lès-Nancy</settlement></placeName><orgName type="university">Université Henri Poincaré</orgName></affiliation></author><author><name sortKey="Couturier, Jeremy" sort="Couturier, Jeremy" uniqKey="Couturier J" first="Jérémy" last="Couturier">Jérémy Couturier</name></author><author><name sortKey="Jacquot, Jean Pierre" sort="Jacquot, Jean Pierre" uniqKey="Jacquot J" first="Jean-Pierre" last="Jacquot">Jean-Pierre Jacquot</name></author></analytic><series><title level="j">Journal of experimental botany</title><idno type="ISSN">0022-0957</idno><imprint><date when="2006" type="published">2006</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Amino Acid Sequence (MeSH)</term><term>Arabidopsis (genetics)</term><term>Genome, Plant (MeSH)</term><term>Glutaredoxins (MeSH)</term><term>Glutathione Reductase (genetics)</term><term>Molecular Sequence Data (MeSH)</term><term>Multigene Family (MeSH)</term><term>Oryza (genetics)</term><term>Oxidation-Reduction (MeSH)</term><term>Oxidoreductases (genetics)</term><term>Oxidoreductases (physiology)</term><term>Plant Proteins (genetics)</term><term>Plant Proteins (physiology)</term><term>Populus (enzymology)</term><term>Populus (genetics)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Arabidopsis (génétique)</term><term>Données de séquences moléculaires (MeSH)</term><term>Famille multigénique (MeSH)</term><term>Glutarédoxines (MeSH)</term><term>Glutathione reductase (génétique)</term><term>Génome végétal (MeSH)</term><term>Oryza (génétique)</term><term>Oxidoreductases (génétique)</term><term>Oxidoreductases (physiologie)</term><term>Oxydoréduction (MeSH)</term><term>Populus (enzymologie)</term><term>Populus (génétique)</term><term>Protéines végétales (génétique)</term><term>Protéines végétales (physiologie)</term><term>Séquence d'acides aminés (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Glutathione Reductase</term><term>Oxidoreductases</term><term>Plant Proteins</term></keywords><keywords scheme="MESH" type="chemical" qualifier="physiology" xml:lang="en"><term>Oxidoreductases</term><term>Plant Proteins</term></keywords><keywords scheme="MESH" type="chemical" xml:lang="en"><term>Glutaredoxins</term></keywords><keywords scheme="MESH" qualifier="enzymologie" xml:lang="fr"><term>Populus</term></keywords><keywords scheme="MESH" qualifier="enzymology" xml:lang="en"><term>Populus</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Arabidopsis</term><term>Oryza</term><term>Populus</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Arabidopsis</term><term>Glutathione reductase</term><term>Oryza</term><term>Oxidoreductases</term><term>Populus</term><term>Protéines végétales</term></keywords><keywords scheme="MESH" qualifier="physiologie" xml:lang="fr"><term>Oxidoreductases</term><term>Protéines végétales</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Amino Acid Sequence</term><term>Genome, Plant</term><term>Molecular Sequence Data</term><term>Multigene Family</term><term>Oxidation-Reduction</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Données de séquences moléculaires</term><term>Famille multigénique</term><term>Glutarédoxines</term><term>Génome végétal</term><term>Oxydoréduction</term><term>Séquence d'acides aminés</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The recent release of the first tree genome (Populus trichocarpa) has allowed a comparison to be made of the multigenic glutaredoxin (Grx) and glutathione reductase (GR) families of this tree with those of other sequenced organisms and especially of the two other fully sequenced plant species, Arabidopsis thaliana and Oryza sativa. Grxs are small proteins involved in disulphide bridge or protein-glutathione adduct reduction, and they are maintained in a reduced form using glutathione and an NADPH-dependent GR. While the P. trichocarpa and O. sativa genomes are nearly five times larger than that of A. thaliana, they contain approximately 45 000 and 37 500 genes compared with the 25 500 genes of A. thaliana. On the one hand, the GR gene composition varies little between species and the gene structures are relatively conserved. On the other hand, the Grx gene family can be divided into three subgroups and the gene content is larger in P. trichocarpa (36 genes) compared with A. thaliana and O. sativa (31 and 27 genes, respectively). This could be partly explained by the occurrence of more duplication events, and this is especially true for one of the three identified Grx subgroups (subgroup III). The expression of most of these genes was confirmed by analysing expressed sequence tags present in various databases. In addition, the expression of Grx of subgroups I and II was examined by RT-PCR in various poplar organs. A complete classification based essentially on gene structure and sequence identity is proposed.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">16720602</PMID><DateCompleted><Year>2006</Year><Month>10</Month><Day>04</Day></DateCompleted><DateRevised><Year>2015</Year><Month>11</Month><Day>19</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Print">0022-0957</ISSN><JournalIssue CitedMedium="Print"><Volume>57</Volume><Issue>8</Issue><PubDate><Year>2006</Year></PubDate></JournalIssue><Title>Journal of experimental botany</Title><ISOAbbreviation>J Exp Bot</ISOAbbreviation></Journal><ArticleTitle>Genome-wide analysis of plant glutaredoxin systems.</ArticleTitle><Pagination><MedlinePgn>1685-96</MedlinePgn></Pagination><Abstract><AbstractText>The recent release of the first tree genome (Populus trichocarpa) has allowed a comparison to be made of the multigenic glutaredoxin (Grx) and glutathione reductase (GR) families of this tree with those of other sequenced organisms and especially of the two other fully sequenced plant species, Arabidopsis thaliana and Oryza sativa. Grxs are small proteins involved in disulphide bridge or protein-glutathione adduct reduction, and they are maintained in a reduced form using glutathione and an NADPH-dependent GR. While the P. trichocarpa and O. sativa genomes are nearly five times larger than that of A. thaliana, they contain approximately 45 000 and 37 500 genes compared with the 25 500 genes of A. thaliana. On the one hand, the GR gene composition varies little between species and the gene structures are relatively conserved. On the other hand, the Grx gene family can be divided into three subgroups and the gene content is larger in P. trichocarpa (36 genes) compared with A. thaliana and O. sativa (31 and 27 genes, respectively). This could be partly explained by the occurrence of more duplication events, and this is especially true for one of the three identified Grx subgroups (subgroup III). The expression of most of these genes was confirmed by analysing expressed sequence tags present in various databases. In addition, the expression of Grx of subgroups I and II was examined by RT-PCR in various poplar organs. A complete classification based essentially on gene structure and sequence identity is proposed.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Rouhier</LastName><ForeName>Nicolas</ForeName><Initials>N</Initials><AffiliationInfo><Affiliation>UMR-1136 Interaction arbres microorganismes, INRA, IFR 110, Génomique Ecologie et Ecophysiologie Fonctionnelles, Faculté des Sciences, BP 239, Université Henri Poincaré, F-54506 Vandoeuvre-lès-Nancy Cedex, France. nrouhier@scbiol.uhp-nancy.fr</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Couturier</LastName><ForeName>Jérémy</ForeName><Initials>J</Initials></Author><Author ValidYN="Y"><LastName>Jacquot</LastName><ForeName>Jean-Pierre</ForeName><Initials>JP</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D016454">Review</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2006</Year><Month>05</Month><Day>23</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>J Exp Bot</MedlineTA><NlmUniqueID>9882906</NlmUniqueID><ISSNLinking>0022-0957</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D054477">Glutaredoxins</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D010940">Plant Proteins</NameOfSubstance></Chemical><Chemical><RegistryNumber>EC 1.-</RegistryNumber><NameOfSubstance UI="D010088">Oxidoreductases</NameOfSubstance></Chemical><Chemical><RegistryNumber>EC 1.8.1.7</RegistryNumber><NameOfSubstance UI="D005980">Glutathione Reductase</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000595" MajorTopicYN="N">Amino Acid Sequence</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D017360" MajorTopicYN="N">Arabidopsis</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018745" MajorTopicYN="Y">Genome, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D054477" MajorTopicYN="N">Glutaredoxins</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005980" MajorTopicYN="N">Glutathione Reductase</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005810" MajorTopicYN="N">Multigene Family</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012275" MajorTopicYN="N">Oryza</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010084" MajorTopicYN="N">Oxidation-Reduction</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010088" MajorTopicYN="N">Oxidoreductases</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000502" MajorTopicYN="N">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010940" MajorTopicYN="N">Plant Proteins</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000502" MajorTopicYN="N">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000201" MajorTopicYN="N">enzymology</QualifierName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading></MeshHeadingList><NumberOfReferences>42</NumberOfReferences></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="pubmed"><Year>2006</Year><Month>5</Month><Day>25</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2006</Year><Month>10</Month><Day>5</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2006</Year><Month>5</Month><Day>25</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">16720602</ArticleId><ArticleId IdType="pii">erl001</ArticleId><ArticleId IdType="doi">10.1093/jxb/erl001</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>France</li></country><region><li>Grand Est</li><li>Lorraine (région)</li></region><settlement><li>Vandœuvre-lès-Nancy</li></settlement><orgName><li>Université Henri Poincaré</li></orgName></list><tree><noCountry><name sortKey="Couturier, Jeremy" sort="Couturier, Jeremy" uniqKey="Couturier J" first="Jérémy" last="Couturier">Jérémy Couturier</name><name sortKey="Jacquot, Jean Pierre" sort="Jacquot, Jean Pierre" uniqKey="Jacquot J" first="Jean-Pierre" last="Jacquot">Jean-Pierre Jacquot</name></noCountry><country name="France"><region name="Grand Est"><name sortKey="Rouhier, Nicolas" sort="Rouhier, Nicolas" uniqKey="Rouhier N" first="Nicolas" last="Rouhier">Nicolas Rouhier</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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